Curated BLAST for Genomes

 

Curated BLAST

Searching in Ferroglobus placidus DSM 10642 (GCF_000025505.1)

Found 16 curated entries in PaperBLAST's database that match '1.4.1.16' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Ferroglobus placidus DSM 10642, or try another query

FERP_RS06470 Ferp_1302 WP_012965799.1: type II glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

Q7MW40: diaminopimelate dehydrogenase (EC 1.4.1.16) from Porphyromonas gingivalis

22% id,
83% cov

Q67PI3: diaminopimelate dehydrogenase (EC 1.4.1.16) from Symbiobacterium thermophilum

28% id,
35% cov

DAPDH_ACET2 / A3DDX7: Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Acetivibrio thermocellus
A3DDX7: diaminopimelate dehydrogenase (EC 1.4.1.16) from Acetivibrio thermocellus

24% id,
36% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory