Curated BLAST for Genomes

 

Curated BLAST

Searching in Ferroglobus placidus DSM 10642 (GCF_000025505.1)

Found 75 curated entries in PaperBLAST's database that match '2.6.1.42' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Ferroglobus placidus DSM 10642, or try another query

ilvE FERP_RS00315 Ferp_0064 WP_012964603.1: branched-chain-amino-acid transaminase
is similar to:
PaperBLAST

A0A1B1L2T7: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Bacillus thuringiensis

54% id,
98% cov

GB|AAU18968.1: branched-chain amino acid aminotransferase 2; EC 2.6.1.42 from Bacillus cereus

54% id,
98% cov

E6TUA8: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Evansella cellulosilytica

53% id,
97% cov

More...

FERP_RS02970 Ferp_0595 WP_244403225.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

28% id,
94% cov

FERP_RS05975 Ferp_1199 WP_012965700.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

28% id,
92% cov

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

25% id,
99% cov

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

27% id,
92% cov

FERP_RS12225 Ferp_2446 WP_012966888.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

27% id,
93% cov

FERP_RS04050 Ferp_0809 WP_012965320.1: LL-diaminopimelate aminotransferase
is similar to:
PaperBLAST

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

26% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

512805-513992 (frame +3) on NC_013849.1 Ferroglobus placidus DSM 10642, complete sequence
is similar to:
PaperBLAST

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.
Also see hits to annotated proteins above

28% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory