Curated BLAST for Genomes

 

Curated BLAST

Searching in Ferroglobus placidus DSM 10642 (GCF_000025505.1)

Found 32 curated entries in PaperBLAST's database that match '2.6.1.44' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Ferroglobus placidus DSM 10642, or try another query

FERP_RS04050 Ferp_0809 WP_012965320.1: LL-diaminopimelate aminotransferase
is similar to:
PaperBLAST

D2Z0I0: alanine-glyoxylate transaminase (EC 2.6.1.44) from Hydrogenobacter thermophilus

42% id,
96% cov

aspC / Q4FNY9: alanine—glyoxylate transaminase (EC 2.6.1.44) from Pelagibacter ubique

32% id,
100% cov

FERP_RS12225 Ferp_2446 WP_012966888.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

aspC / Q4FNY9: alanine—glyoxylate transaminase (EC 2.6.1.44) from Pelagibacter ubique

33% id,
99% cov

D2Z0I0: alanine-glyoxylate transaminase (EC 2.6.1.44) from Hydrogenobacter thermophilus

29% id,
96% cov

FERP_RS05975 Ferp_1199 WP_012965700.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

aspC / Q4FNY9: alanine—glyoxylate transaminase (EC 2.6.1.44) from Pelagibacter ubique

33% id,
97% cov

D2Z0I0: alanine-glyoxylate transaminase (EC 2.6.1.44) from Hydrogenobacter thermophilus

28% id,
97% cov

FERP_RS11050 Ferp_2205 WP_012966670.1: alanine--glyoxylate aminotransferase family protein
is similar to:
PaperBLAST

SGAT_ARATH / Q56YA5: Serine--glyoxylate aminotransferase; Alanine--glyoxylate aminotransferase; AGT; Asparagine aminotransferase; Serine--pyruvate aminotransferase; EC 2.6.1.45; EC 2.6.1.44; EC 2.6.1.-; EC 2.6.1.51 from Arabidopsis thaliana
Q56YA5: asparagine-oxo-acid transaminase (EC 2.6.1.14); alanine-glyoxylate transaminase (EC 2.6.1.44); serine-glyoxylate transaminase (EC 2.6.1.45) from Arabidopsis thaliana

34% id,
91% cov

A2V838: alanine-glyoxylate transaminase (EC 2.6.1.44) from Homo sapiens

32% id,
95% cov

AGT1_HUMAN / P21549: Alanine--glyoxylate aminotransferase; AGT; Serine--pyruvate aminotransferase; SPT; EC 2.6.1.44; EC 2.6.1.51 from Homo sapiens
AGXT1 / P21549: Serine--pyruvate aminotransferase (EC 2.6.1.44; EC 2.6.1.51) from Homo sapiens

32% id,
95% cov

More...

FERP_RS01920 Ferp_0381 WP_012964905.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

AGT22_ARATH / Q94AL9: Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial; Beta-alanine-pyruvate aminotransferase 2; EC 2.6.1.44 from Arabidopsis thaliana

33% id,
87% cov

Q9SR86: beta-alanine-pyruvate transaminase (EC 2.6.1.18); alanine-glyoxylate transaminase (EC 2.6.1.44) from Arabidopsis thaliana

32% id,
86% cov

AGT21_ARATH / Q940M2: Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial; Beta-alanine-pyruvate aminotransferase 1; EC 2.6.1.44 from Arabidopsis thaliana

31% id,
87% cov

More...

FERP_RS02970 Ferp_0595 WP_244403225.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

aspC / Q4FNY9: alanine—glyoxylate transaminase (EC 2.6.1.44) from Pelagibacter ubique

30% id,
91% cov

D2Z0I0: alanine-glyoxylate transaminase (EC 2.6.1.44) from Hydrogenobacter thermophilus

31% id,
89% cov

FERP_RS05655 Ferp_1134 WP_012965636.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

AGT21_ARATH / Q940M2: Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial; Beta-alanine-pyruvate aminotransferase 1; EC 2.6.1.44 from Arabidopsis thaliana

29% id,
68% cov

Q9SR86: beta-alanine-pyruvate transaminase (EC 2.6.1.18); alanine-glyoxylate transaminase (EC 2.6.1.44) from Arabidopsis thaliana

27% id,
68% cov

AGT22_ARATH / Q94AL9: Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial; Beta-alanine-pyruvate aminotransferase 2; EC 2.6.1.44 from Arabidopsis thaliana

27% id,
65% cov

More...

hemL FERP_RS08870 Ferp_1770 WP_012966252.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:
PaperBLAST

Q9SR86: beta-alanine-pyruvate transaminase (EC 2.6.1.18); alanine-glyoxylate transaminase (EC 2.6.1.44) from Arabidopsis thaliana

28% id,
63% cov

AGT22_ARATH / Q94AL9: Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial; Beta-alanine-pyruvate aminotransferase 2; EC 2.6.1.44 from Arabidopsis thaliana

25% id,
65% cov

AGT21_ARATH / Q940M2: Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial; Beta-alanine-pyruvate aminotransferase 1; EC 2.6.1.44 from Arabidopsis thaliana

24% id,
66% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1909679-1910836 (frame -2) on NC_013849.1 Ferroglobus placidus DSM 10642, complete sequence
is similar to:
PaperBLAST

A2V838: alanine-glyoxylate transaminase (EC 2.6.1.44) from Homo sapiens
Also see hits to annotated proteins above

32% id,
97% cov

AGT1_HUMAN / P21549: Alanine--glyoxylate aminotransferase; AGT; Serine--pyruvate aminotransferase; SPT; EC 2.6.1.44; EC 2.6.1.51 from Homo sapiens
AGXT1 / P21549: Serine--pyruvate aminotransferase (EC 2.6.1.44; EC 2.6.1.51) from Homo sapiens
Also see hits to annotated proteins above

32% id,
97% cov

AGT1_RABIT / P31030: Alanine--glyoxylate aminotransferase; AGT; Serine--pyruvate aminotransferase; SPT; EC 2.6.1.44; EC 2.6.1.51 from Oryctolagus cuniculus
Also see hits to annotated proteins above

31% id,
94% cov

More...

512805-513992 (frame +3) on NC_013849.1 Ferroglobus placidus DSM 10642, complete sequence
is similar to:
PaperBLAST

D2Z0I0: alanine-glyoxylate transaminase (EC 2.6.1.44) from Hydrogenobacter thermophilus
Also see hits to annotated proteins above

30% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory