Curated BLAST for Genomes

 

Curated BLAST

Searching in Ferroglobus placidus DSM 10642 (GCF_000025505.1)

Found 7 curated entries in PaperBLAST's database that match '4.3.1.12' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Ferroglobus placidus DSM 10642, or try another query

ala FERP_RS09930 Ferp_1977 WP_012966453.1: alanine dehydrogenase
is similar to:
PaperBLAST

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium tumefaciens

34% id,
84% cov

arcB / J7SH14: ornithine cyclodeaminase subunit (EC 4.3.1.12) from Clostridium sporogenes

29% id,
91% cov

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum

35% id,
76% cov

More...

FERP_RS11190 Ferp_2234 WP_012966698.1: TIGR00300 family protein
is similar to:
PaperBLAST

agrE / Q8YMD9: arginine dihydrolase/ornithine cyclodeaminase (EC 4.3.1.12) from Nostoc sp.

46% id,
58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory