Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermocrinis albus DSM 14484 (GCF_000025605.1)

Found 58 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Thermocrinis albus DSM 14484, or try another query

aroE THAL_RS04965 Thal_0975 WP_012992013.1: shikimate dehydrogenase
is similar to:		 PaperBLAST

AROE_AQUAE / O67049: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus
O67049: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aquifex aeolicus

 54% id,
96% cov

AROE_THET8 / Q5SJF8: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus
Q5SJF8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Thermus thermophilus

 42% id,
93% cov

O27957: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Archaeoglobus fulgidus

 40% id,
93% cov

More...

aroD THAL_RS02710 Thal_0543 WP_012991584.1: type I 3-dehydroquinate dehydratase
is similar to:		 PaperBLAST

A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

 34% id,
42% cov

A0A168S2H6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera

 33% id,
41% cov

A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

 32% id,
42% cov

More...

hemA THAL_RS06910 Thal_1359 WP_012992396.1: glutamyl-tRNA reductase
is similar to:		 PaperBLAST

AROE_AQUAE / O67049: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus
O67049: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aquifex aeolicus

 26% id,
35% cov

A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

 29% id,
25% cov

A0A168S2G5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera

 24% id,
26% cov

More...

THAL_RS05515 Thal_1084 WP_012992122.1: NAD(P)-dependent oxidoreductase
is similar to:		 PaperBLAST

AROE_AQUAE / O67049: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus
O67049: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aquifex aeolicus

 28% id,
32% cov

aroA THAL_RS07695 Thal_1513 WP_012992548.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:		 PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans

 29% id,
27% cov

fabG THAL_RS03265 Thal_0648 WP_012991688.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:		 PaperBLAST

A0A5H2WVH6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Eucalyptus camaldulensis

 41% id,
12% cov

A0A168S2H6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera

 41% id,
12% cov

A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

 41% id,
12% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory