Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermocrinis albus DSM 14484 (GCF_000025605.1)

Found 38 curated entries in PaperBLAST's database that match '2.3.3.13' as complete word(s).

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thermocrinis albus DSM 14484, or try another query

leuA THAL_RS05225 Thal_1025 WP_012992063.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

LEU11_LEPIN / Q8F445: 2-isopropylmalate synthase 1; Alpha-IPM synthase 1; Alpha-isopropylmalate synthase 1; EC 2.3.3.13 from Leptospira interrogans

53% id,
99% cov

LEU1_NEIMB / Q9JZG1: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Neisseria meningitidis
Q9JZG1: 2-isopropylmalate synthase (EC 2.3.3.13) from Neisseria meningitidis

52% id,
99% cov

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

52% id,
97% cov

More...

cimA THAL_RS05040 Thal_0990 WP_012992028.1: citramalate synthase
is similar to:
PaperBLAST

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

34% id,
94% cov

LeuA / b0074: 2-isopropylmalate synthase (EC 2.3.3.13) from Escherichia coli
leuA / P09151: 2-isopropylmalate synthase (EC 2.3.3.13) from Escherichia coli

31% id,
97% cov

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

32% id,
95% cov

More...

THAL_RS02075 Thal_0418 WP_012991460.1: homocitrate synthase
is similar to:
PaperBLAST

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

36% id,
83% cov

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

34% id,
82% cov

B0SN40: 2-isopropylmalate synthase (EC 2.3.3.13) from Leptospira biflexa

31% id,
82% cov

More...

cfiA THAL_RS01320 Thal_0268 WP_012991310.1: 2-oxoglutarate carboxylase large subunit
is similar to:
PaperBLAST

LEU1_SOYBN / Q39891: Probable 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; Late nodulin-56; N-56; EC 2.3.3.13 from Glycine max

28% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory