Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermocrinis albus DSM 14484 (GCF_000025605.1)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thermocrinis albus DSM 14484, or try another query

leuA THAL_RS05225 Thal_1025 WP_012992063.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

48% id,
95% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

44% id,
92% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

39% id,
98% cov

More...

THAL_RS02075 Thal_0418 WP_012991460.1: homocitrate synthase
is similar to:
PaperBLAST

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

38% id,
84% cov

NIFV_AZOVI / P05342: Homocitrate synthase; EC 2.3.3.14 from Azotobacter vinelandii
nifV / P05342: homocitrate synthase monomer (EC 2.3.3.14) from Azotobacter vinelandii

37% id,
82% cov

A0A1Y6KBA1: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

37% id,
76% cov

More...

cimA THAL_RS05040 Thal_0990 WP_012992028.1: citramalate synthase
is similar to:
PaperBLAST

HOSA_THET2 / O87198: Homocitrate synthase; HCS; EC 2.3.3.14 from Thermus thermophilus
hcs / O87198: homocitrate synthase (EC 2.3.3.14) from Thermus thermophilus

32% id,
95% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

34% id,
88% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

30% id,
94% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory