Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermocrinis albus DSM 14484 (GCF_000025605.1)

Found 9 curated entries in PaperBLAST's database that match '6.3.2.43' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Thermocrinis albus DSM 14484, or try another query

carB THAL_RS00805 Thal_0163 WP_012991206.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

LYSX_THET8 / Q5SH23: Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Thermus thermophilus
lysX / Q5SH23: L-2-aminoadipate--LysW ligase monomer (EC 6.3.2.43) from Thermus thermophilus
Q5SH23: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Thermus thermophilus

28% id,
65% cov

Q5JFW0: lysyltransferase (EC 2.3.2.3); [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43); glutamate---[amino group carrier protein] ligase (EC 6.3.2.60) from Thermococcus kodakarensis

25% id,
58% cov

carB THAL_RS07680 Thal_1511 WP_012992546.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

LYSX_SULAC / Q4JAP9: Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Sulfolobus acidocaldarius
Q4JAP9: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Sulfolobus acidocaldarius

25% id,
67% cov

lysS THAL_RS01940 Thal_0390 WP_012991432.1: lysine--tRNA ligase
is similar to:
PaperBLAST

A5U2Z7: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
P9WFU7: lysyltransferase (EC 2.3.2.3); [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis

42% id,
38% cov

aspS THAL_RS06430 Thal_1263 WP_012992301.1: aspartate--tRNA ligase
is similar to:
PaperBLAST

A5U2Z7: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
P9WFU7: lysyltransferase (EC 2.3.2.3); [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis

28% id,
23% cov

epmA THAL_RS05185 Thal_1018 WP_012992056.1: elongation factor P--(R)-beta-lysine ligase
is similar to:
PaperBLAST

A5U2Z7: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
P9WFU7: lysyltransferase (EC 2.3.2.3); [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis

30% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory