Curated BLAST for Genomes

 

Curated BLAST

Searching in Denitrovibrio acetiphilus DSM 12809 (GCF_000025725.1)

Found 5 curated entries in PaperBLAST's database that match '2.6.1.66' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Denitrovibrio acetiphilus DSM 12809, or try another query

DACET_RS00570 Dacet_0113 WP_013009467.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis

36% id,
98% cov

DACET_RS14545 Dacet_2882 WP_013012119.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis

26% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

109781-110947 (frame +2) on NC_013943.1 Denitrovibrio acetiphilus DSM 12809, complete sequence
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis
Also see hits to annotated proteins above

35% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory