Curated BLAST for Genomes

 

Curated BLAST

Searching in Denitrovibrio acetiphilus DSM 12809 (GCF_000025725.1)

Found 36 curated entries in PaperBLAST's database that match '2.6.1.83' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Denitrovibrio acetiphilus DSM 12809, or try another query

DACET_RS00020 Dacet_0003 WP_013009358.1: LL-diaminopimelate aminotransferase
is similar to:		 PaperBLAST

DAPAT_METJA / Q58786: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanocaldococcus jannaschii
dapL / Q58786: L,L-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanocaldococcus jannaschii

 57% id,
98% cov

DAPAT_METMP / Q6LX26: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanococcus maripaludis

 55% id,
100% cov

Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans

 43% id,
96% cov

More...

DACET_RS00570 Dacet_0113 WP_013009467.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

Q8TQ40: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanosarcina acetivorans

 29% id,
97% cov

Q3MDN5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis

 27% id,
97% cov

DACET_RS07770 Dacet_1550 WP_013010833.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

DAPAT_SYNFM / A0LEA5: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Syntrophobacter fumaroxidans
A0LEA5: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Syntrophobacter fumaroxidans

 26% id,
95% cov

O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus

 27% id,
91% cov

DAPAT_METTH / O26158: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Methanothermobacter thermautotrophicus
O26158: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Methanothermobacter thermautotrophicus

 26% id,
95% cov

More...

DACET_RS14545 Dacet_2882 WP_013012119.1: pyridoxal phosphate-dependent aminotransferase
is similar to:		 PaperBLAST

O66630: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Aquifex aeolicus

 24% id,
80% cov

Q9ZQI7: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Arabidopsis thaliana

 24% id,
59% cov

DACET_RS00755 Dacet_0150 WP_013009503.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

DAPAT_ACET2 / A3DK17: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Acetivibrio thermocellus

 28% id,
41% cov

Q3MAL4: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Trichormus variabilis

 31% id,
31% cov

DAPAT_SYNY3 / Q55828: LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 from Synechocystis sp.
Q55828: LL-diaminopimelate aminotransferase (EC 2.6.1.83) from Synechocystis sp.

 27% id,
31% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory