Curated BLAST for Genomes

 

Curated BLAST

Searching in Denitrovibrio acetiphilus DSM 12809 (GCF_000025725.1)

Found 68 curated entries in PaperBLAST's database that match '4.2.1.10' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Denitrovibrio acetiphilus DSM 12809, or try another query

aroQ DACET_RS00315 Dacet_0062 WP_013009416.1: type II 3-dehydroquinate dehydratase
is similar to:
PaperBLAST

A3M692: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Acinetobacter baumannii

57% id,
93% cov

AROQ_ACTPL / P43877: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Actinobacillus pleuropneumoniae

58% id,
91% cov

M1E6S9: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Thermodesulfobium narugense

53% id,
95% cov

More...

aroE DACET_RS06690 Dacet_1333 WP_013010627.1: shikimate dehydrogenase
is similar to:
PaperBLAST

A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

29% id,
49% cov

Q6PUF9: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

29% id,
46% cov

Q6PUG0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

26% id,
50% cov

More...

aroB DACET_RS00305 Dacet_0060 WP_013009414.1: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

34% id,
22% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

31% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory