Curated BLAST for Genomes

 

Curated BLAST

Searching in Denitrovibrio acetiphilus DSM 12809 (GCF_000025725.1)

Found 2 curated entries in PaperBLAST's database that match 'acetohydroxybutanoate synthase, regulatory subunit' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Denitrovibrio acetiphilus DSM 12809, or try another query

ilvN DACET_RS02090 Dacet_0416 WP_013009759.1: acetolactate synthase small subunit
is similar to:
PaperBLAST

BrnP / b0078: acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit (EC 2.2.1.6) from Escherichia coli
ilvH / P00894: acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit (EC 2.2.1.6) from Escherichia coli

48% id,
98% cov

DACET_RS09440 Dacet_1876 WP_013011150.1: ACT domain-containing protein
is similar to:
PaperBLAST

BrnP / b0078: acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit (EC 2.2.1.6) from Escherichia coli
ilvH / P00894: acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit (EC 2.2.1.6) from Escherichia coli

36% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory