Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Desulfotalea psychrophila LSv54 (GCF_000025945.1)

Found 42 curated entries in PaperBLAST's database that match '1.1.1.95' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfotalea psychrophila LSv54, or try another query

DP_RS08685 DP1709 WP_011188950.1: phosphoglycerate dehydrogenase is similar to:	PaperBLAST
Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa	29% id, 83% cov
PGDH1 / A2DLU8: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Trichomonas vaginalis	26% id, 86% cov
SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli serA / RF\|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli	32% id, 69% cov
Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii	26% id, 83% cov
A4VGK3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas stutzeri	29% id, 72% cov
SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	28% id, 71% cov
H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori	33% id, 59% cov
U3RH61: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Acanthamoeba castellanii	25% id, 76% cov
serA / GB\|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis	32% id, 59% cov
Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis	32% id, 53% cov
P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis	32% id, 53% cov
SERA_RAT / O08651: D-3-phosphoglycerate dehydrogenase; 3-PGDH; EC 1.1.1.95 from Rattus norvegicus Phgdh / O08651: 3-phosphoglycerate dehydrogenase subunit (EC 1.1.1.95) from Rattus norvegicus O08651: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Rattus norvegicus	29% id, 57% cov
SERA3_ARATH / Q9LT69: D-3-phosphoglycerate dehydrogenase 3, chloroplastic; EC 1.1.1.95 from Arabidopsis thaliana Q9LT69: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	29% id, 57% cov
SERA_HUMAN / O43175: D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens PHGDH / O43175: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens O43175: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Homo sapiens	29% id, 57% cov
SERA_MOUSE / Q61753: D-3-phosphoglycerate dehydrogenase; 3-PGDH; A10; EC 1.1.1.95 from Mus musculus Q61753: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mus musculus	29% id, 57% cov
Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor	32% id, 51% cov
EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica	28% id, 58% cov
SER33_YEAST / P40510: D-3-phosphoglycerate dehydrogenase 2; 3-PGDH 2; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae	27% id, 56% cov
A0A1Z4EAX4: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	30% id, 45% cov
SERA2_ARATH / O04130: D-3-phosphoglycerate dehydrogenase 2, chloroplastic; PGDH; EC 1.1.1.95 from Arabidopsis thaliana O04130: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	30% id, 43% cov
A0A2R6X868: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Marchantia polymorpha	30% id, 43% cov
SERA1_ARATH / O49485: D-3-phosphoglycerate dehydrogenase 1, chloroplastic; Protein EMBRYO SAC DEVELOPMENT ARREST 9; EC 1.1.1.95 from Arabidopsis thaliana O49485: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana	29% id, 45% cov
A0A1Z4EAX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris	29% id, 41% cov
EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica	32% id, 33% cov
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DP_RS00265 DP0059 WP_228130155.1: FAD-linked oxidase C-terminal domain-containing protein is similar to:	PaperBLAST
HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae	30% id, 13% cov
BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans	29% id, 11% cov
HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae	28% id, 11% cov
BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans	38% id, 6% cov
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DP_RS05150 DP1022 WP_011188265.1: FAD-linked oxidase C-terminal domain-containing protein is similar to:	PaperBLAST
BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans	29% id, 8% cov
HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae	36% id, 6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory