Curated BLAST for Genomes

 

Curated BLAST

Searching in Azoarcus olearius BH72 (GCF_000061505.1)

Found 25 curated entries in PaperBLAST's database that match '1.4.4.2' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Azoarcus olearius BH72, or try another query

gcvP AZO_RS06490 azo1285 WP_011765018.1: aminomethyl-transferring glycine dehydrogenase
is similar to:
PaperBLAST

BWI76_RS23870: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Klebsiella michiganensis

63% id,
100% cov

GCSP_ECOLI / P33195: Glycine dehydrogenase (decarboxylating); Glycine cleavage system P-protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Escherichia coli
GcvP / b2903: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli
gcvP: glycine dehydrogenase [decarboxylating]; EC 1.4.4.2 from Escherichia coli
gcvP / P33195: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli

63% id,
100% cov

PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae

59% id,
100% cov

More...

gcvH AZO_RS06495 azo1286 WP_011765019.1: glycine cleavage system protein GcvH
is similar to:
PaperBLAST

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

40% id,
74% cov

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

39% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1389687-1390286 (frame -2) on NC_008702.1 Azoarcus olearius, complete sequence
is similar to:
PaperBLAST

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana
Also see hits to annotated proteins above

37% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory