Curated BLAST for Genomes

 

Curated BLAST

Searching in Azoarcus olearius BH72 (GCF_000061505.1)

Found 1 curated entries in PaperBLAST's database that match 'citramalate isomerase small subunit' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Azoarcus olearius BH72, or try another query

leuD AZO_RS05280 azo1040 WP_011764774.1: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

LEUD_METJA / Q58673: Isopropylmalate/citramalate isomerase small subunit; (R)-2-methylmalate dehydratase; (R)-citramalate dehydratase; 3-isopropylmalate dehydratase; Alpha-isopropylmalate dehydratase; Citraconate hydratase; Isopropylmalate isomerase; IPMI; Maleate hydratase; Malease; EC 4.2.1.33; EC 4.2.1.35; EC 4.2.1.31 from Methanocaldococcus jannaschii

37% id,
51% cov

acnA AZO_RS07750 azo1533 WP_011765266.1: aconitate hydratase AcnA
is similar to:
PaperBLAST

LEUD_METJA / Q58673: Isopropylmalate/citramalate isomerase small subunit; (R)-2-methylmalate dehydratase; (R)-citramalate dehydratase; 3-isopropylmalate dehydratase; Alpha-isopropylmalate dehydratase; Citraconate hydratase; Isopropylmalate isomerase; IPMI; Maleate hydratase; Malease; EC 4.2.1.33; EC 4.2.1.35; EC 4.2.1.31 from Methanocaldococcus jannaschii

25% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory