Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Rhizobium etli CFN 42 (GCF_000092045.1)

Found 82 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Rhizobium etli CFN 42, or try another query

RHE_RS11845 WP_020921416.1: NADP-dependent isocitrate dehydrogenase is similar to:	PaperBLAST
B7GQR3: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Bifidobacterium longum	73% id, 100% cov
IDH1_MYCTU / P9WKL1: Isocitrate dehydrogenase [NADP] 1; ICD-1; ICDH-1; IDH 1; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Mycobacterium tuberculosis icd1 / P9WKL1: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Mycobacterium tuberculosis P9WKL1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis A5U813: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis	73% id, 99% cov
ICDHC_ARATH / Q9SRZ6: Cytosolic isocitrate dehydrogenase [NADP]; EC 1.1.1.42 from Arabidopsis thaliana cICDH / Q9SRZ6: NADP+-dependent isocitrate dehydrogenase (EC 1.1.1.42) from Arabidopsis thaliana Q9SRZ6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Arabidopsis thaliana	69% id, 99% cov
IDHC_SOYBN / Q06197: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Glycine max	68% id, 99% cov
Q6R6M7: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Pisum sativum	68% id, 99% cov
A0AR16: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Pinus pinaster	69% id, 97% cov
Q4E4L7: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Trypanosoma cruzi	68% id, 99% cov
J9Q6L4: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Capsicum annuum	67% id, 98% cov
ICDHX_ARATH / Q9SLK0: Peroxisomal isocitrate dehydrogenase [NADP]; EC 1.1.1.42 from Arabidopsis thaliana Q9SLK0: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Arabidopsis thaliana	67% id, 98% cov
IDHC_HUMAN / O75874: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Homo sapiens IDH1 / O75874: cytosolic NADP(+)-dependent isocitrate dehydrogenase monomer (EC 1.1.1.42) from Homo sapiens O75874: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Homo sapiens	67% id, 99% cov
IDHC_BOVIN / Q9XSG3: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bos taurus	66% id, 99% cov
Q6C2Y4: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Yarrowia lipolytica	67% id, 97% cov
IDHC_MOUSE / O88844: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Mus musculus O88844: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mus musculus	66% id, 99% cov
A0A4X1UZU9: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Sus scrofa	66% id, 99% cov
IDHP_PIG / P33198: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Sus scrofa	66% id, 97% cov
IDHC_RAT / P41562: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Rattus norvegicus P41562: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Rattus norvegicus	66% id, 97% cov
IDHC_YEAST / P41939: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Saccharomyces cerevisiae IDP2 / P41939: NADP-dependent isocitrate dehydrogenase (EC 1.1.1.42) from Saccharomyces cerevisiae P41939: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Saccharomyces cerevisiae	64% id, 98% cov
P21954: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Saccharomyces cerevisiae	64% id, 95% cov
IDHP_MOUSE / P54071: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Mus musculus P54071: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mus musculus	67% id, 90% cov
IDHP_RAT / P56574: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Rattus norvegicus P56574: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Rattus norvegicus	66% id, 90% cov
IDHP_HUMAN / P48735: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Homo sapiens IDH2 / P48735: mitochondrial isocitrate dehydrogenase monomer (EC 1.1.1.42) from Homo sapiens P48735: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Homo sapiens	66% id, 90% cov
A0A2G2Y555: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Capsicum annuum	68% id, 86% cov
Q4DG65: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Trypanosoma cruzi	63% id, 94% cov
IDHP_SCHPO / O14254: Probable isocitrate dehydrogenase [NADP], mitochondrial; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Schizosaccharomyces pombe	63% id, 92% cov
ICDHP_ARATH / Q8LPJ5: Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial; EC 1.1.1.42 from Arabidopsis thaliana	69% id, 83% cov
O65853: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Nicotiana tabacum	67% id, 84% cov
idpA: mitochondrial NADP-dependent isocitrate dehydrogenase; EC 1.1.1.42 from Emericella nidulans	63% id, 82% cov
Q6AQ66: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Desulfotalea psychrophila	50% id, 99% cov
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RHE_RS28195 RHE_PF00339 WP_011428646.1: tartrate dehydrogenase is similar to:	PaperBLAST
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; ICDH; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii	31% id, 85% cov
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui	30% id, 85% cov
icd / RF\|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus	35% id, 68% cov
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus	28% id, 84% cov
IDH_CALNO / P96318: Isocitrate dehydrogenase [NADP]; ICDH; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Caldococcus noboribetus P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus	26% id, 77% cov
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum	37% id, 35% cov
IDH_ARCFU / O29610: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Archaeoglobus fulgidus	34% id, 35% cov
IDH_BACSU / P39126: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bacillus subtilis icd / GB\|CAB14873.1: isocitrate dehydrogenase; EC 1.1.1.42 from Bacillus subtilis	42% id, 26% cov
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leuB RHE_RS20920 RHE_CH04093 WP_011427274.1: 3-isopropylmalate dehydrogenase is similar to:	PaperBLAST
IDH_CALNO / P96318: Isocitrate dehydrogenase [NADP]; ICDH; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Caldococcus noboribetus P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus	29% id, 91% cov
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui	27% id, 92% cov
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum	26% id, 94% cov
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix	28% id, 88% cov
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus	26% id, 92% cov
icd / RF\|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus	32% id, 67% cov
IDH_ARCFU / O29610: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Archaeoglobus fulgidus	32% id, 42% cov
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; ICDH; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii	33% id, 38% cov
IDH_SYNY3 / P80046: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP isocitrate dehydrogenase; NADP-IDH; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Synechocystis sp.	36% id, 30% cov
IDH_NOSS1 / P50214: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-isocitrate dehydrogenase; NADP(+)-IDH; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Nostoc sp.	29% id, 36% cov
A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa	33% id, 28% cov
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The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4335353-4336516 (frame +2) on NC_007761.1 Rhizobium etli CFN 42, complete sequence is similar to:	PaperBLAST
IDH_CALNO / P96318: Isocitrate dehydrogenase [NADP]; ICDH; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Caldococcus noboribetus P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus Also see hits to annotated proteins above	28% id, 95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory