Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizobium etli CFN 42 (GCF_000092045.1)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.59' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Rhizobium etli CFN 42, or try another query

RHE_RS25490 RHE_PE00280 WP_011428134.1: GMC family oxidoreductase
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

61% id,
94% cov

RHE_RS22360 RHE_PB00070 WP_042119661.1: GMC family oxidoreductase
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

57% id,
96% cov

RHE_RS08830 RHE_CH01728 WP_020921058.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

38% id,
93% cov

betA RHE_RS05805 RHE_CH01136 WP_011424477.1: choline dehydrogenase
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

37% id,
94% cov

RHE_RS22145 RHE_PB00029 WP_011427495.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Ureibacillus massiliensis

30% id,
96% cov

RHE_RS14745 RHE_CH02884 WP_020921820.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Ureibacillus massiliensis

28% id,
97% cov

RHE_RS28330 RHE_PF00365 WP_011428671.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Ureibacillus massiliensis

32% id,
78% cov

RHE_RS12430 RHE_CH02433 WP_020921494.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

HPD1 / A0A1D8PQ07: 3-hydroxypropanonate dehydrogenase (EC 1.1.1.59) from Candida albicans
A0A1D8PQ07: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Candida albicans

23% id,
84% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory