Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizobium etli CFN 42 (GCF_000092045.1)

Found 10 curated entries in PaperBLAST's database that match '1.14.13.2' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Rhizobium etli CFN 42, or try another query

pobA RHE_RS17600 RHE_CH03444 WP_042118977.1: 4-hydroxybenzoate 3-monooxygenase
is similar to:
PaperBLAST

RR42_RS21940: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Cupriavidus basilensis

66% id,
100% cov

PHHY_PSEFL / P00438: p-hydroxybenzoate hydroxylase; PHBH; PHBHase; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas fluorescens
pobA / P00438: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas fluorescens

65% id,
99% cov

PHHY_PSEAE / P20586: p-hydroxybenzoate hydroxylase; PHBH; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas aeruginosa

65% id,
99% cov

More...

RHE_RS10365 RHE_CH02023 WP_011425291.1: FAD-dependent monooxygenase
is similar to:
PaperBLAST

Pf6N2E2_2914: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas fluorescens

28% id,
97% cov

PHHY_PSEFL / P00438: p-hydroxybenzoate hydroxylase; PHBH; PHBHase; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas fluorescens
pobA / P00438: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas fluorescens

27% id,
97% cov

RR42_RS21940: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Cupriavidus basilensis

27% id,
99% cov

More...

RHE_RS00265 RHE_CH00051 WP_011423455.1: cytochrome P450
is similar to:
PaperBLAST

bmp12 / A0A1S6M1N0: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Hormoscilla spongeliae

26% id,
87% cov

RHE_RS10015 RHE_CH01962 WP_042118372.1: UbiH/UbiF family hydroxylase
is similar to:
PaperBLAST

Pf6N2E2_2914: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas fluorescens

25% id,
80% cov

pobA / Q9R9T1: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas putida
Q9R9T1: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas putida

24% id,
79% cov

PHHY_PSEAE / P20586: p-hydroxybenzoate hydroxylase; PHBH; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas aeruginosa

29% id,
46% cov

More...

RHE_RS20325 RHE_CH03976 WP_011427166.1: ubiquinone biosynthesis hydroxylase
is similar to:
PaperBLAST

PHHY_PSEFL / P00438: p-hydroxybenzoate hydroxylase; PHBH; PHBHase; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas fluorescens
pobA / P00438: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas fluorescens

29% id,
65% cov

PHHY_PSEAE / P20586: p-hydroxybenzoate hydroxylase; PHBH; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas aeruginosa

28% id,
65% cov

RR42_RS21940: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Cupriavidus basilensis

26% id,
62% cov

RHE_RS10420 RHE_CH02034 WP_011425302.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q6SSJ6: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2); 3-hydroxybenzoate 4-monooxygenase (EC 1.14.13.23) from Comamonas testosteroni

27% id,
53% cov

PHHY_PSEFL / P00438: p-hydroxybenzoate hydroxylase; PHBH; PHBHase; 4-hydroxybenzoate 3-monooxygenase; EC 1.14.13.2 from Pseudomonas fluorescens
pobA / P00438: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas fluorescens

27% id,
45% cov

pobA / Q9R9T1: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas putida
Q9R9T1: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas putida

25% id,
49% cov

More...

RHE_RS18220 RHE_CH03565 WP_004677801.1: glutamate synthase subunit beta
is similar to:
PaperBLAST

pobA / Q9R9T1: p-hydroxybenzoate hydroxylase (EC 1.14.13.2) from Pseudomonas putida
Q9R9T1: 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) from Pseudomonas putida

31% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory