Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Rhizobium etli CFN 42 (GCF_000092045.1)

Found 34 curated entries in PaperBLAST's database that match '2.3.3.5' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Rhizobium etli CFN 42, or try another query

gltA RHE_RS09835 RHE_CH01926 WP_008526864.1: citrate synthase is similar to:	PaperBLAST
PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium	32% id, 99% cov
PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	34% id, 92% cov
Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens	33% id, 93% cov
PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	31% id, 98% cov
PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis	31% id, 97% cov
P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis	31% id, 97% cov
PRPC_MYCTE / H8F0D7: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; CS; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis PRPC_MYCTU / I6Y9Q3: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis	31% id, 95% cov
Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa	32% id, 93% cov
Q9KSC1: 2-methylcitrate synthase (EC 2.3.3.5) from Vibrio cholerae	31% id, 95% cov
Q8X694: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	31% id, 91% cov
PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli prpC / GB\|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	31% id, 91% cov
PRPC_SALTY / Q56063: 2-methylcitrate synthase; 2-MCS; mcs; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Salmonella typhimurium prpC / Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella typhimurium Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella enterica	31% id, 91% cov
PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans	29% id, 92% cov
Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator	30% id, 89% cov
More...

RHE_RS11160 RHE_CH02182 WP_042118499.1: citrate synthase is similar to:	PaperBLAST
P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis	29% id, 97% cov
PRPC_MYCTE / H8F0D7: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; CS; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis PRPC_MYCTU / I6Y9Q3: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis	29% id, 67% cov
Q9KSC1: 2-methylcitrate synthase (EC 2.3.3.5) from Vibrio cholerae	38% id, 49% cov
PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium	33% id, 54% cov
Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens	34% id, 49% cov
Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa	31% id, 54% cov
Q8X694: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	32% id, 52% cov
PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli prpC / GB\|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	32% id, 52% cov
PRPC_SALTY / Q56063: 2-methylcitrate synthase; 2-MCS; mcs; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Salmonella typhimurium prpC / Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella typhimurium Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella enterica	32% id, 52% cov
PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans	31% id, 53% cov
PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis	33% id, 50% cov
Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator	32% id, 51% cov
PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	33% id, 49% cov
PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis	36% id, 21% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory