Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizobium etli CFN 42 (GCF_000092045.1)

Found 12 curated entries in PaperBLAST's database that match '4.1.3.17' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Rhizobium etli CFN 42, or try another query

RHE_RS23745 RHE_PC00179 WP_011427805.1: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
is similar to:
PaperBLAST

HMGA_PSEP1 / A5W059: 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas putida
A5W059: 4-hydroxy-4-methyl-2-oxoglutarate aldolase (EC 4.1.3.17) from Pseudomonas putida

42% id,
92% cov

GALC_PSEPK / Q88JX9: 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase; CHA aldolase; Gallate degradation protein C; EC 4.1.3.17 from Pseudomonas putida
galC / Q88JX9: subunit of 4-hydroxy-4-methyl-2-oxoglutarate aldolase (EC 4.1.3.17) from Pseudomonas putida

41% id,
92% cov

LIGK_SPHSK / G2IQQ8: 4-carboxy-4-hydroxy-2-oxoadipate aldolase; CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Sphingobium sp.

37% id,
93% cov

More...

RHE_RS24510 RHE_PE00095 WP_011427953.1: ribonuclease activity regulator RraA
is similar to:
PaperBLAST

pmdF / Q93PS8: HMG aldolase monomer (EC 4.1.3.17) from Comamonas testosteroni

34% id,
89% cov

HMGA_PSEOC / Q9AQI0: 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; 4-hydroxy-2-oxoglutarate aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.16; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas straminea
proA / Q9AQI0: 4-oxalocitramalate aldolase subunit (EC 4.1.1.112; EC 4.1.3.17) from Pseudomonas straminea

33% id,
89% cov

LIGK_SPHSK / G2IQQ8: 4-carboxy-4-hydroxy-2-oxoadipate aldolase; CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Sphingobium sp.

32% id,
87% cov

More...

RHE_RS25735 RHE_PE00326 WP_011428180.1: aldolase/citrate lyase family protein
is similar to:
PaperBLAST

CGHB_CHAGB / Q2HBN5: 4-hydroxy-4-methyl-2-oxoglutarate aldolase cghB; Sch210972 biosynthesis cluster protein B; EC 4.1.3.17 from Chaetomium globosum

30% id,
78% cov

RHE_RS23075 RHE_PC00045 WP_011427672.1: ribonuclease activity regulator RraA
is similar to:
PaperBLAST

HMGA_PSEP1 / A5W059: 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas putida
A5W059: 4-hydroxy-4-methyl-2-oxoglutarate aldolase (EC 4.1.3.17) from Pseudomonas putida

27% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory