Curated BLAST for Genomes

 

Curated BLAST

Searching in Arcobacter nitrofigilis DSM 7299 (GCF_000092245.1)

Found 76 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 63 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Arcobacter nitrofigilis DSM 7299, or try another query

ARNIT_RS07815 Arnit_1568 WP_013135367.1: lactate dehydrogenase
is similar to:
PaperBLAST

LDH_SELRU / Q9EVR0: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Selenomonas ruminantium

41% id,
98% cov

B9MKZ8: L-lactate dehydrogenase (EC 1.1.1.27) from Caldicellulosiruptor bescii

34% id,
98% cov

B1A4R6: L-lactate dehydrogenase (EC 1.1.1.27) from Thermoanaerobacter ethanolicus

33% id,
99% cov

More...

mdh ARNIT_RS09570 Arnit_1922 WP_013135721.1: malate dehydrogenase
is similar to:
PaperBLAST

Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii

41% id,
97% cov

Q8I8U5: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria acervulina

41% id,
94% cov

LDH: lactate dehydrogenase; EC 1.1.1.27 from Plasmodium falciparum
LDH / GB|ABA46354.1: lactate dehydrogenase; EC 1.1.1.27 from Plasmodium falciparum

39% id,
97% cov

More...

ARNIT_RS00640 Arnit_0129 WP_013133941.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

37% id,
99% cov

Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

32% id,
92% cov

ARNIT_RS00635 Arnit_0128 WP_013133940.1: lactate utilization protein B
is similar to:
PaperBLAST

lutB / O07021: component of an iron-sulfur oxidase linked to L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

39% id,
92% cov

Q5F883: L-lactate dehydrogenase (subunit 1/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

43% id,
75% cov

ARNIT_RS08300 Arnit_1664 WP_013135463.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

30% id,
99% cov

ARNIT_RS00630 Arnit_0127 WP_013133939.1: LUD domain-containing protein
is similar to:
PaperBLAST

lutC / O32259: component of an iron-sulfur oxidase for L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

28% id,
80% cov

Q5F884: L-lactate dehydrogenase (subunit 2/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

22% id,
94% cov

ARNIT_RS09110 Arnit_1830 WP_013135629.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

26% id,
43% cov

ARNIT_RS07940 Arnit_1593 WP_013135392.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

25% id,
44% cov

ARNIT_RS14790 Arnit_2941 WP_013136734.1: phosphonoacetaldehyde reductase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

31% id,
34% cov

guaB ARNIT_RS07150 Arnit_1431 WP_013135234.1: IMP dehydrogenase
is similar to:
PaperBLAST

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

29% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

119092-119694 (frame -2) on NC_014166.1 Arcobacter nitrofigilis DSM 7299, complete sequence
is similar to:
PaperBLAST

lutC / O32259: component of an iron-sulfur oxidase for L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis
Also see hits to annotated proteins above

28% id,
83% cov

1594691-1595854 (frame +2) on NC_014166.1 Arcobacter nitrofigilis DSM 7299, complete sequence
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
Also see hits to annotated proteins above

25% id,
47% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory