Curated BLAST for Genomes

 

Curated BLAST

Searching in Arcobacter nitrofigilis DSM 7299 (GCF_000092245.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Arcobacter nitrofigilis DSM 7299, or try another query

thrB ARNIT_RS02400 Arnit_0478 WP_013134288.1: homoserine kinase
is similar to:
PaperBLAST

P07128: homoserine kinase (EC 2.7.1.39) from Corynebacterium glutamicum

33% id,
84% cov

KHSE_METMP / Q6M0H5: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Methanococcus maripaludis

30% id,
92% cov

thrB / Q58504: homoserine kinase monomer (EC 2.7.1.39) from Methanocaldococcus jannaschii

29% id,
93% cov

More...

ARNIT_RS09165 Arnit_1841 WP_013135640.1: phosphotransferase
is similar to:
PaperBLAST

Ga0059261_3253: homoserine kinase (EC 2.7.1.39) from Sphingomonas koreensis

24% id,
73% cov

KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Pseudomonas aeruginosa

40% id,
20% cov

ARNIT_RS14710 Arnit_2925 WP_013136718.1: kinase
is similar to:
PaperBLAST

CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp.

33% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory