Curated BLAST for Genomes

 

Curated BLAST

Searching in Arcobacter nitrofigilis DSM 7299 (GCF_000092245.1)

Found 31 curated entries in PaperBLAST's database that match '4.1.3.30' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Arcobacter nitrofigilis DSM 7299, or try another query

prpB ARNIT_RS13710 Arnit_2727 WP_013136520.1: methylisocitrate lyase
is similar to:
PaperBLAST

PRPB_ECOLI / P77541: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Escherichia coli
YahQ / b0331: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli
prpB / P77541: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli

65% id,
99% cov

prpB / Q0KAG5: 2-methylcitrate lyase (EC 4.1.3.30) from Cupriavidus necator

66% id,
97% cov

PRPB_CUPNE / Q937P0: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Cupriavidus necator

65% id,
97% cov

More...

aepX ARNIT_RS14800 Arnit_2943 WP_013136736.1: phosphoenolpyruvate mutase
is similar to:
PaperBLAST

Q2L8W6: Methylisocitrate lyase (EC 4.1.3.30) from Toxoplasma gondii

27% id,
72% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory