Curated BLAST for Genomes

 

Curated BLAST

Searching in Arcobacter nitrofigilis DSM 7299 (GCF_000092245.1)

Found 33 curated entries in PaperBLAST's database that match '4.2.1.51' as complete word(s).

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Arcobacter nitrofigilis DSM 7299, or try another query

pheA ARNIT_RS02150 Arnit_0428 WP_013134238.1: chorismate mutase
is similar to:
PaperBLAST

CMPDT_STUST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Stutzerimonas stutzeri

40% id,
100% cov

PHEA_METJA / Q58054: Prephenate dehydratase; PDT; MjPDT; EC 4.2.1.51 from Methanocaldococcus jannaschii

38% id,
97% cov

Q8DUV6: prephenate dehydratase (EC 4.2.1.51) from Streptococcus mutans

33% id,
98% cov

More...

ARNIT_RS13585 Arnit_2702 WP_013136495.1: transporter substrate-binding domain-containing protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

27% id,
87% cov

ARNIT_RS14270 Arnit_2840 WP_013136633.1: transporter substrate-binding domain-containing protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

26% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2718716-2719549 (frame -1) on NC_014166.1 Arcobacter nitrofigilis DSM 7299, complete sequence
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa
Also see hits to annotated proteins above

26% id,
90% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory