Curated BLAST for Genomes

 

Curated BLAST

Searching in Arcobacter nitrofigilis DSM 7299 (GCF_000092245.1)

Found 31 curated entries in PaperBLAST's database that match '4.3.1.19' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Arcobacter nitrofigilis DSM 7299, or try another query

ilvA ARNIT_RS02585 Arnit_0515 WP_013134325.1: threonine ammonia-lyase
is similar to:
PaperBLAST

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

48% id,
100% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

45% id,
98% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

44% id,
99% cov

More...

trpB ARNIT_RS04730 Arnit_0942 WP_041660335.1: tryptophan synthase subunit beta
is similar to:
PaperBLAST

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

28% id,
75% cov

A0QX60: threonine ammonia-lyase (EC 4.3.1.19) from Mycolicibacterium smegmatis

25% id,
74% cov

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

25% id,
69% cov

More...

cysK ARNIT_RS15545 Arnit_3087 WP_013136878.1: cysteine synthase A
is similar to:
PaperBLAST

ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli
Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli
ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli
P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli

28% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory