Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia atlantica CCGE1002 (GCF_000092885.1)

Found 10 curated entries in PaperBLAST's database that match '2.7.1.58' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paraburkholderia atlantica CCGE1002, or try another query

BC1002_RS13360 BC1002_2672 WP_013090558.1: 2-dehydro-3-deoxygalactonokinase
is similar to:
PaperBLAST

BPHYT_RS16950: 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) from Burkholderia phytofirmans

77% id,
100% cov

AO356_20280: 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) from Pseudomonas fluorescens

54% id,
99% cov

HSERO_RS05160: 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) from Herbaspirillum seropedicae

53% id,
97% cov

More...

BC1002_RS00845 BC1002_0168 WP_013088178.1: carbohydrate kinase
is similar to:
PaperBLAST

KDGK2_HALVD / D4GR05: 2-dehydro-3-deoxygalactonokinase; 2-keto-3-deoxygalactonate kinase; KDGal kinase; KDGK-2; EC 2.7.1.58 from Haloferax volcanii
D4GR05: 6-phosphofructokinase (EC 2.7.1.11); 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) from Haloferax volcanii

26% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory