Curated BLAST for Genomes

 

Curated BLAST

Searching in Kyrpidia tusciae DSM 2912 (GCF_000092905.1)

Found 38 curated entries in PaperBLAST's database that match '2.3.3.13' as complete word(s).

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Kyrpidia tusciae DSM 2912, or try another query

BTUS_RS04780 Btus_0948 WP_280990929.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

Q72JC9: 2-isopropylmalate synthase (EC 2.3.3.13) from Thermus thermophilus

53% id,
97% cov

LEU1_NEIMB / Q9JZG1: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Neisseria meningitidis
Q9JZG1: 2-isopropylmalate synthase (EC 2.3.3.13) from Neisseria meningitidis

49% id,
100% cov

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

50% id,
97% cov

More...

dmpG BTUS_RS04890 Btus_0969 WP_013074999.1: 4-hydroxy-2-oxovalerate aldolase
is similar to:
PaperBLAST

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

28% id,
87% cov

A0A0G2T6D7: 2-isopropylmalate synthase (EC 2.3.3.13) from Solanum pennellii

23% id,
87% cov

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

25% id,
77% cov

More...

BTUS_RS09435 Btus_1887 WP_013075870.1: pyruvate carboxylase
is similar to:
PaperBLAST

LEU1_METJA / Q58595: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Methanocaldococcus jannaschii
Q58595: 2-isopropylmalate synthase (EC 2.3.3.13) from Methanocaldococcus jannaschii

31% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory