Curated BLAST for Genomes

 

Curated BLAST

Searching in Kyrpidia tusciae DSM 2912 (GCF_000092905.1)

Found 26 curated entries in PaperBLAST's database that match '5.3.1.16' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Kyrpidia tusciae DSM 2912, or try another query

hisA BTUS_RS10915 Btus_2169 WP_013076130.1: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
is similar to:
PaperBLAST

CCNA_03852: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Caulobacter crescentus

44% id,
97% cov

Ga0059261_1047: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Sphingomonas koreensis

44% id,
95% cov

Psest_0155: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas stutzeri

43% id,
96% cov

More...

hisF BTUS_RS10910 Btus_2168 WP_013076129.1: imidazole glycerol phosphate synthase subunit HisF
is similar to:
PaperBLAST

Psest_0155: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas stutzeri

30% id,
91% cov

PP_0292: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas putida

33% id,
80% cov

HSERO_RS20320: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Herbaspirillum seropedicae

29% id,
89% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory