Curated BLAST for Genomes

 

Curated BLAST

Searching in Kyrpidia tusciae DSM 2912 (GCF_000092905.1)

Found 21 curated entries in PaperBLAST's database that match '6.3.4.5' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Kyrpidia tusciae DSM 2912, or try another query

BTUS_RS11055 Btus_2199 WP_013076159.1: argininosuccinate synthase
is similar to:		 PaperBLAST

ASSY_THET8 / P59846: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Thermus thermophilus

 50% id,
99% cov

ASSY_THEMA / Q9X2A1: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Thermotoga maritima

 49% id,
99% cov

H9BG20: argininosuccinate synthase (EC 6.3.4.5) from Leishmania donovani

 47% id,
95% cov

More...

mnmA BTUS_RS05505 Btus_1096 WP_013075123.1: tRNA 2-thiouridine(34) synthase MnmA
is similar to:		 PaperBLAST

ASSY_HUMAN / P00966: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Homo sapiens
ASS1 / P00966: Argininosuccinate synthase (EC 6.3.4.5) from Homo sapiens
P00966: argininosuccinate synthase (EC 6.3.4.5) from Homo sapiens

 32% id,
28% cov

ASSY_BOVIN / P14568: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Bos taurus

 32% id,
28% cov

ASSY_RAT / P09034: Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 from Rattus norvegicus

 31% id,
28% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory