Curated BLAST for Genomes

 

Curated BLAST

Searching in Kyrpidia tusciae DSM 2912 (GCF_000092905.1)

Found 5 curated entries in PaperBLAST's database that match 'arginosuccinate lyase' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Kyrpidia tusciae DSM 2912, or try another query

argH BTUS_RS11050 Btus_2198 WP_013076158.1: argininosuccinate lyase
is similar to:
PaperBLAST

AN2914: arginosuccinate lyase (Eurofung) from Emericella nidulans

43% id,
91% cov

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

33% id,
100% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

37% id,
87% cov

More...

purB BTUS_RS04100 Btus_0814 WP_013074859.1: adenylosuccinate lyase
is similar to:
PaperBLAST

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

25% id,
69% cov

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

23% id,
77% cov

CA265_RS18485: arginosuccinate lyase (EC 4.3.2.1) from Pedobacter sp.

23% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory