Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfarculus baarsii DSM 2075 (GCF_000143965.1)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfarculus baarsii DSM 2075, or try another query

DEBA_RS07700 Deba_1537 WP_043814022.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

lldE / Q8EGS4: L-lactate dehydrogenase LldE subunit (EC 1.1.2.3) from Shewanella oneidensis

27% id,
98% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

29% id,
56% cov

DEBA_RS14915 Deba_2985 WP_222832018.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

28% id,
37% cov

DEBA_RS06855 Deba_1372 WP_013258193.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

30% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory