Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfarculus baarsii DSM 2075 (GCF_000143965.1)

Found 11 curated entries in PaperBLAST's database that match '2.3.3.21' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfarculus baarsii DSM 2075, or try another query

cimA DEBA_RS04730 Deba_0943 WP_013257767.1: citramalate synthase
is similar to:
PaperBLAST

CIMA_GEOSL / Q74C76: (R)-citramalate synthase; Citramalate synthase; EC 2.3.3.21 from Geobacter sulfurreducens
cimA / Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens
Q74C76: (R)-citramalate synthase (EC 2.3.3.21) from Geobacter sulfurreducens

53% id,
98% cov

DVU1914: (R)-citramalate synthase (EC 2.3.3.21) from Desulfovibrio vulgaris

53% id,
98% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp.

49% id,
100% cov

More...

DEBA_RS03775 Deba_0753 WP_013257580.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii
cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii
Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii

42% id,
99% cov

B0K6M2: (R)-citramalate synthase (EC 2.3.3.21) from Thermoanaerobacter sp.

31% id,
100% cov

CIMA_SULAC / Q4J6H1: (R)-citramalate synthase; Citramalate synthase; CMS; EC 2.3.3.21 from Sulfolobus acidocaldarius

30% id,
98% cov

More...

DEBA_RS06835 Deba_1368 WP_013258189.1: pyruvate carboxylase subunit B
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii
cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii
Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii

22% id,
28% cov

DEBA_RS10130 Deba_2028 WP_013258834.1: NADH:flavin oxidoreductase
is similar to:
PaperBLAST

CIMA_METJA / Q58787: (R)-citramalate synthase CimA; EC 2.3.3.21 from Methanocaldococcus jannaschii
cimA / Q58787: (R)-citratemalate synthase subunit (EC 2.3.3.21) from Methanocaldococcus jannaschii
Q58787: (R)-citramalate synthase (EC 2.3.3.21) from Methanocaldococcus jannaschii

34% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory