Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfarculus baarsii DSM 2075 (GCF_000143965.1)

Found 22 curated entries in PaperBLAST's database that match '2.7.2.11' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Desulfarculus baarsii DSM 2075, or try another query

proB DEBA_RS12000 Deba_2402 WP_013259203.1: glutamate 5-kinase
is similar to:
PaperBLAST

PROB_ECOLI / P0A7B5: Glutamate 5-kinase; Gamma-glutamyl kinase; GK; EC 2.7.2.11 from Escherichia coli
ProB / b0242: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
proB: glutamate 5-kinase; EC 2.7.2.11 from Escherichia coli
proB / P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli

41% id,
100% cov

Ga0059261_3512: glutamate 5-kinase (EC 2.7.2.11) from Sphingomonas koreensis

40% id,
98% cov

Q6E235: glutamate 5-kinase (EC 2.7.2.11) from Bacillus subtilis

39% id,
99% cov

More...

DEBA_RS12005 Deba_2403 WP_013259204.1: glutamate-5-semialdehyde dehydrogenase
is similar to:
PaperBLAST

P5CS1_ORYSJ / O04226: Delta-1-pyrroline-5-carboxylate synthase 1; OsP5CS1; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

39% id,
57% cov

P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana

40% id,
56% cov

P5CS2_ORYSJ / Q941T1: Delta-1-pyrroline-5-carboxylate synthase 2; OsP5CS2; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

37% id,
56% cov

More...

pyrH DEBA_RS03720 Deba_0742 WP_013257569.1: UMP kinase
is similar to:
PaperBLAST

P9WHU9: glutamate 5-kinase (EC 2.7.2.11) from Mycobacterium tuberculosis

24% id,
54% cov

Q6E235: glutamate 5-kinase (EC 2.7.2.11) from Bacillus subtilis

36% id,
13% cov

DEBA_RS04735 Deba_0944 WP_013257768.1: aspartate kinase
is similar to:
PaperBLAST

PROB_YEAST / P32264: Glutamate 5-kinase; GK; Gamma-glutamyl kinase; EC 2.7.2.11 from Saccharomyces cerevisiae
P32264: glutamate 5-kinase (EC 2.7.2.11) from Saccharomyces cerevisiae

24% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2648811-2650823 (frame +3) on NC_014365.1 Desulfarculus baarsii DSM 2075, complete sequence
is similar to:
PaperBLAST

P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana
Also see hits to annotated proteins above

39% id,
60% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory