Curated BLAST for Genomes

 

Curated BLAST

Searching in Leeuwenhoekiella blandensis MED217 (GCF_000152985.1)

Found 23 curated entries in PaperBLAST's database that match '1.3.8.4' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Leeuwenhoekiella blandensis MED217, or try another query

MED217_RS15750 MED217_16010 WP_009781542.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

41% id,
98% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

41% id,
98% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

41% id,
98% cov

More...

MED217_RS13915 MED217_14110 WP_009781175.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

B5UB85: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Bombyx mori

39% id,
92% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

35% id,
100% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

35% id,
98% cov

More...

MED217_RS01145 MED217_01175 WP_009778630.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

36% id,
98% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

34% id,
99% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

34% id,
98% cov

More...

MED217_RS07745 MED217_07821 WP_009779945.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

35% id,
95% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

35% id,
95% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

34% id,
97% cov

More...

MED217_RS17515 MED217_17815 WP_009781898.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

30% id,
99% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

29% id,
96% cov

B5UB85: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Bombyx mori

28% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory