Curated BLAST for Genomes

 

Curated BLAST

Searching in Leeuwenhoekiella blandensis MED217 (GCF_000152985.1)

Found 1 curated entries in PaperBLAST's database that match '1.3.99.10' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Leeuwenhoekiella blandensis MED217, or try another query

MED217_RS15750 MED217_16010 WP_009781542.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

40% id,
88% cov

MED217_RS13915 MED217_14110 WP_009781175.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

36% id,
87% cov

MED217_RS07745 MED217_07821 WP_009779945.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

34% id,
89% cov

MED217_RS01145 MED217_01175 WP_009778630.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

32% id,
87% cov

MED217_RS17515 MED217_17815 WP_009781898.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

30% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory