Curated BLAST for Genomes

 

Curated BLAST

Searching in Leeuwenhoekiella blandensis MED217 (GCF_000152985.1)

Found 20 curated entries in PaperBLAST's database that match '3.5.3.11' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Leeuwenhoekiella blandensis MED217, or try another query

speB MED217_RS02975 MED217_03010 WP_009778995.1: agmatinase
is similar to:
PaperBLAST

APAUH_THEKO / Q5JI38: N(1)-aminopropylagmatine ureohydrolase; APA ureohydrolase; APAUH; Agmatinase; Protein SpeB homolog; EC 3.5.3.24; EC 3.5.3.11 from Thermococcus kodakarensis

31% id,
96% cov

SPEB_METJA / Q57757: Agmatinase; EC 3.5.3.11 from Methanocaldococcus jannaschii
Q57757: agmatinase (EC 3.5.3.11) from Methanocaldococcus jannaschii

34% id,
85% cov

AGMT_PYRHO / O57839: Agmatinase; EC 3.5.3.11 from Pyrococcus horikoshii

29% id,
93% cov

More...

hutG MED217_RS06355 MED217_06417 WP_009779667.1: formimidoylglutamase
is similar to:
PaperBLAST

speB / P70999: agmatinase (EC 3.5.3.11) from Bacillus subtilis

28% id,
92% cov

SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis

28% id,
86% cov

MED217_RS03180 MED217_03215 WP_009779036.1: enoyl-CoA hydratase/isomerase family protein
is similar to:
PaperBLAST

speB / P70999: agmatinase (EC 3.5.3.11) from Bacillus subtilis

38% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory