Curated BLAST for Genomes

 

Curated BLAST

Searching in Leeuwenhoekiella blandensis MED217 (GCF_000152985.1)

Found 5 curated entries in PaperBLAST's database that match '4.1.2.20' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Leeuwenhoekiella blandensis MED217, or try another query

MED217_RS02175 MED217_02210 WP_009778837.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

26% id,
97% cov

MED217_RS08010 MED217_08091 WP_009779999.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

37% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory