Curated BLAST for Genomes

 

Curated BLAST

Searching in Leeuwenhoekiella blandensis MED217 (GCF_000152985.1)

Found 7 curated entries in PaperBLAST's database that match '4.2.1.42' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Leeuwenhoekiella blandensis MED217, or try another query

MED217_RS04610 MED217_04647 WP_009779318.1: altronate dehydratase family protein
is similar to:
PaperBLAST

PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae

36% id,
68% cov

GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli
YhaG / b3128: (EC 4.2.1.42) from Escherichia coli
garD / P39829: galactarate dehydratase (EC 4.2.1.42) from Escherichia coli

35% id,
68% cov

HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae

35% id,
66% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory