Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodomicrobium vannielii ATCC 17100 (GCF_000166055.1)

Found 103 curated entries in PaperBLAST's database that match '2.6.1.1' as complete word(s).

These curated entries have 76 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Rhodomicrobium vannielii ATCC 17100, or try another query

RVAN_RS06420 Rvan_1278 WP_013418943.1: pyridoxal phosphate-dependent aminotransferase
is similar to:		 PaperBLAST

AAPAT_CERS1 / A3PMF8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.79 from Cereibacter sphaeroides

 71% id,
100% cov

AAPAT_RHIME / Q02635: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.79 from Rhizobium meliloti
Q02635: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

 71% id,
100% cov

AAT_RHIME / P58350: Aspartate aminotransferase; AAT; AspAT; Putative 2-aminoadipate transaminase; Transaminase A; EC 2.6.1.1; EC 2.6.1.39 from Rhizobium meliloti

 58% id,
97% cov

More...

RVAN_RS14850 Rvan_2956 WP_013420529.1: phosphoserine transaminase
is similar to:		 PaperBLAST

serC / Q8TNI1: phosphoserine aminotransferase monomer (EC 2.6.1.52; EC 2.6.1.1) from Methanosarcina acetivorans

 63% id,
100% cov

RVAN_RS16195 Rvan_3230 WP_013420784.1: LL-diaminopimelate aminotransferase
is similar to:		 PaperBLAST

Q8YTF2: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

 42% id,
94% cov

Q8YUK5: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

 35% id,
99% cov

AAPAT_RHIME / Q02635: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.79 from Rhizobium meliloti
Q02635: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

 31% id,
98% cov

More...

RVAN_RS01125 Rvan_0222 WP_013417919.1: branched-chain amino acid aminotransferase
is similar to:		 PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli
ilvE / P0AB80: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

 39% id,
96% cov

hisC RVAN_RS15315 Rvan_3048 WP_013420621.1: histidinol-phosphate transaminase
is similar to:		 PaperBLAST

hisC / P17731: histidinol-phosphate aminotransferase; tyrosine/phenylalanine aminotransferase (promiscuous) (EC 2.6.1.1; EC 2.6.1.9) from Bacillus subtilis

 36% id,
97% cov

aspC / GB|CAA63799.1: aspartate transaminase; EC 2.6.1.1 from Geobacillus stearothermophilus

 27% id,
91% cov

A0A6F8T0V6: aspartate transaminase (EC 2.6.1.1) from Geobacillus sp.

 26% id,
93% cov

More...

RVAN_RS17170 Rvan_3425 WP_013420964.1: pyridoxal phosphate-dependent aminotransferase
is similar to:		 PaperBLAST

AAPAT_CERS1 / A3PMF8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.79 from Cereibacter sphaeroides

 35% id,
94% cov

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
aspC / RF|YP_143312.1: aspartate transaminase; EC 2.6.1.1 from Thermus thermophilus

 32% id,
96% cov

aspB / GB|CAB14153.1: aspartate transaminase; EC 2.6.1.1 from Bacillus subtilis

 31% id,
97% cov

More...

RVAN_RS11225 Rvan_2228 WP_013419835.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
aspC / RF|YP_143312.1: aspartate transaminase; EC 2.6.1.1 from Thermus thermophilus

 26% id,
93% cov

Q8YMS6: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

 25% id,
92% cov

RVAN_RS16875 Rvan_3370 WP_169309579.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

PAT_ARATH / Q9SIE1: Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; AtAAT; AtPPA-AT; Protein MATERNAL EFFECT EMBRYO ARREST 17; EC 2.6.1.1; EC 2.6.1.78; EC 2.6.1.79 from Arabidopsis thaliana
Q9SIE1: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Arabidopsis thaliana

 24% id,
88% cov

PAT_PETHY / E9L7A5: Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; PhPPA-AT; EC 2.6.1.1; EC 2.6.1.78; EC 2.6.1.79 from Petunia hybrida

 25% id,
80% cov

Q8YY14: aspartate transaminase (EC 2.6.1.1) from Nostoc sp.

 22% id,
75% cov

More...

cobD RVAN_RS18360 Rvan_3663 WP_041787865.1: threonine-phosphate decarboxylase CobD
is similar to:		 PaperBLAST

hisC / P17731: histidinol-phosphate aminotransferase; tyrosine/phenylalanine aminotransferase (promiscuous) (EC 2.6.1.1; EC 2.6.1.9) from Bacillus subtilis

 27% id,
68% cov

ArAT1 / D7F4K3: aromatic amino acid transaminase (EC 2.6.1.1; EC 2.6.1.57) from Cucumis melo

 24% id,
53% cov

RVAN_RS00810 Rvan_0162 WP_013417859.1: O-acetylhomoserine aminocarboxypropyltransferase
is similar to:		 PaperBLAST

A0A6F8T0V6: aspartate transaminase (EC 2.6.1.1) from Geobacillus sp.

 27% id,
61% cov

aspC / GB|CAA63799.1: aspartate transaminase; EC 2.6.1.1 from Geobacillus stearothermophilus

 25% id,
61% cov

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
aspC / RF|YP_143312.1: aspartate transaminase; EC 2.6.1.1 from Thermus thermophilus

 28% id,
46% cov

megL RVAN_RS15795 Rvan_3148 WP_013420715.1: methionine gamma-lyase
is similar to:		 PaperBLAST

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

 24% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory