Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodomicrobium vannielii ATCC 17100 (GCF_000166055.1)

Found 60 curated entries in PaperBLAST's database that match '2.7.2.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Rhodomicrobium vannielii ATCC 17100, or try another query

RVAN_RS13760 Rvan_2733 WP_013420319.1: aspartate kinase
is similar to:		 PaperBLAST

AK_PSEPK / Q88EI9: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas putida

 53% id,
98% cov

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

 53% id,
98% cov

AK_PSEFS / C3JXY0: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas fluorescens

 52% id,
98% cov

More...

proB RVAN_RS01185 Rvan_0234 WP_013417931.1: glutamate 5-kinase
is similar to:		 PaperBLAST

AK_CORFL / P41398: Aspartokinase; Aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens
lysC / GB|AAA23293.1: aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens

 22% id,
81% cov

AK_CORGL / P26512: Aspartokinase; Aspartate kinase; EC 2.7.2.4 from Corynebacterium glutamicum
lysC: aspartate kinase 2; EC 2.7.2.4 from Corynebacterium glutamicum
lysCα / P26512: aspartokinase α subunit (EC 2.7.2.4) from Corynebacterium glutamicum
lysCβ / P26512: aspartokinase β subunit (EC 2.7.2.4) from Corynebacterium glutamicum
P26512: aspartate kinase (EC 2.7.2.4) from Corynebacterium glutamicum

 22% id,
69% cov

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

 26% id,
53% cov

More...

RVAN_RS18395 Rvan_3670 WP_013421190.1: homoserine dehydrogenase
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

 39% id,
42% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

 27% id,
44% cov

pyrH RVAN_RS10030 Rvan_1997 WP_013419618.1: UMP kinase
is similar to:		 PaperBLAST

AK_MYCTU / P9WPX3: Aspartokinase; Aspartate kinase; ASK; EC 2.7.2.4 from Mycobacterium tuberculosis
P9WPX3: aspartate kinase (EC 2.7.2.4) from Mycobacterium tuberculosis

 27% id,
57% cov

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

 28% id,
53% cov

AKLYS_STUS1 / A4VJB4: Aspartate kinase Ask_LysC; Aspartokinase; EC 2.7.2.4 from Stutzerimonas stutzeri

 26% id,
53% cov

More...

lysA RVAN_RS12135 Rvan_2407 WP_013420013.1: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

 33% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory