Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodomicrobium vannielii ATCC 17100 (GCF_000166055.1)

Found 332 curated entries in PaperBLAST's database that match '3.2.1.23' as complete word(s).

These curated entries have 256 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Rhodomicrobium vannielii ATCC 17100, or try another query

RVAN_RS13615 Rvan_2702 WP_013420288.1: glycoside hydrolase family 3 N-terminal domain-containing protein
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

31% id,
78% cov

kdpB RVAN_RS16470 Rvan_3286 WP_013420835.1: potassium-transporting ATPase subunit KdpB
is similar to:
PaperBLAST

ACJ53470.1: β-galactosidase 42C (Blon_2416) (Bga42C) (EC 3.2.1.23)

27% id,
26% cov

RVAN_RS06395 Rvan_1272 WP_013418937.1: hypothetical protein
is similar to:
PaperBLAST

ABA39423.1: β-galactosidase (GalD) (EC 3.2.1.23)

44% id,
7% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory