Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodomicrobium vannielii ATCC 17100 (GCF_000166055.1)

Found 31 curated entries in PaperBLAST's database that match '4.1.3.30' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Rhodomicrobium vannielii ATCC 17100, or try another query

prpB RVAN_RS09205 Rvan_1830 WP_013419462.1: methylisocitrate lyase
is similar to:
PaperBLAST

P54528: Methylisocitrate lyase (EC 4.1.3.30) from Bacillus subtilis

57% id,
96% cov

RR42_RS11260: Methylisocitrate lyase (EC 4.1.3.30) from Cupriavidus basilensis

48% id,
94% cov

prpB / Q0KAG5: 2-methylcitrate lyase (EC 4.1.3.30) from Cupriavidus necator

47% id,
94% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory