Curated BLAST for Genomes

 

Curated BLAST

Searching in Algoriphagus machipongonensis PR1 (GCF_000166275.1)

Found 4 curated entries in PaperBLAST's database that match '4.1.2.20' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Algoriphagus machipongonensis PR1, or try another query

ALPR1_RS17120 ALPR1_17993 WP_008202576.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

35% id,
97% cov

dapA ALPR1_RS15745 ALPR1_16553 WP_008202171.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli

29% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory