Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor hydrothermalis 108 (GCF_000166355.1)

Found 82 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caldicellulosiruptor hydrothermalis 108, or try another query

CALHY_RS10790 Calhy_2130 WP_013403984.1: isocitrate/isopropylmalate dehydrogenase family protein
is similar to:
PaperBLAST

IDH_ARCFU / O29610: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Archaeoglobus fulgidus

44% id,
93% cov

Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus

41% id,
93% cov

IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; ICDH; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii

41% id,
92% cov

More...

leuB CALHY_RS03340 Calhy_0656 WP_013402600.1: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

IDH_ARCFU / O29610: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Archaeoglobus fulgidus

30% id,
92% cov

Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum

29% id,
94% cov

IDH_CALNO / P96318: Isocitrate dehydrogenase [NADP]; ICDH; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Caldococcus noboribetus
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus

30% id,
85% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory