Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor hydrothermalis 108 (GCF_000166355.1)

Found 12 curated entries in PaperBLAST's database that match '4.2.1.43' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Caldicellulosiruptor hydrothermalis 108, or try another query

dapA CALHY_RS08105 Calhy_1600 WP_013403480.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

KDADA_AZOBR / Q1JUQ0: L-2-keto-3-deoxyarabonate dehydratase; L-KDA dehydratase; 2-dehydro-3-deoxy-L-arabinonate dehydratase; L-2-keto-3-deoxyarabinonate dehydratase; EC 4.2.1.43 from Azospirillum brasilense
Q1JUQ0: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) from Azospirillum brasilense

25% id,
91% cov

HSERO_RS06870: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Herbaspirillum seropedicae

25% id,
80% cov

Ac3H11_603: L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) from Acidovorax sp.

23% id,
80% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory