Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor hydrothermalis 108 (GCF_000166355.1)

Found 23 curated entries in PaperBLAST's database that match '5.3.1.5' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Caldicellulosiruptor hydrothermalis 108, or try another query

xylA CALHY_RS10405 Calhy_2055 WP_013403911.1: xylose isomerase
is similar to:
PaperBLAST

D2DK62: xylose isomerase (EC 5.3.1.5) from Thermoanaerobacter ethanolicus

86% id,
100% cov

XYLA_THESA / P30435: Xylose isomerase; EC 5.3.1.5 from Thermoanaerobacterium saccharolyticum

79% id,
100% cov

xylA / G2TH70: xylA (EC 5.3.1.5) from Weizmannia coagulans

68% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory