Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor kronotskyensis 2002 (GCF_000166775.1)

Found 41 curated entries in PaperBLAST's database that match '1.2.1.10' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Caldicellulosiruptor kronotskyensis 2002, or try another query

CALKRO_RS02845 Calkro_0562 WP_013429608.1: iron-containing alcohol dehydrogenase
is similar to:		 PaperBLAST

A0A0H3W5K4: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

 33% id,
46% cov

B0K4A2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.

 31% id,
46% cov

A0A1D3TRQ6: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Anaerobium acetethylicum

 30% id,
46% cov

More...

CALKRO_RS02020 Calkro_0401 WP_013429457.1: iron-containing alcohol dehydrogenase
is similar to:		 PaperBLAST

A0A0H3W5U9: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus
A3DCI2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Acetivibrio thermocellus

 31% id,
47% cov

A0A0H3W5K4: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

 31% id,
47% cov

B0K4A2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.

 32% id,
42% cov

More...

CALKRO_RS08805 Calkro_1745 WP_013430685.1: iron-containing alcohol dehydrogenase family protein
is similar to:		 PaperBLAST

A0A0H3W5K4: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

 29% id,
44% cov

B0K4A2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.

 31% id,
40% cov

A0A1D3TRQ6: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Anaerobium acetethylicum

 28% id,
44% cov

More...

CALKRO_RS05450 Calkro_1081 WP_013430065.1: glutamate-5-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

Q70YJ9: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Polytomella sp.

 26% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1903868-1904986 (frame +2) on NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete sequence
is similar to:		 PaperBLAST

A0A0H3W5K4: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
Also see hits to annotated proteins above

 29% id,
45% cov

B0K4A2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.
Also see hits to annotated proteins above

 31% id,
42% cov

A0A1D3TRQ6: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Anaerobium acetethylicum
Also see hits to annotated proteins above

 28% id,
46% cov

More...

1238305-1239621 (frame +1) on NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete sequence
is similar to:		 PaperBLAST

ADHE_BILW3 / E5Y379: Acetaldehyde dehydrogenase (acetylating); CoA-acylating acetaldehyde dehydrogenase; EC 1.2.1.10 from Bilophila wadsworthia
adhE / E5Y379: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Bilophila wadsworthia

 23% id,
40% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory