Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor kronotskyensis 2002 (GCF_000166775.1)

Found 22 curated entries in PaperBLAST's database that match '4.2.1.22' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Caldicellulosiruptor kronotskyensis 2002, or try another query

cysK CALKRO_RS05590 Calkro_1110 WP_013430091.1: cysteine synthase A
is similar to:
PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

42% id,
99% cov

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

40% id,
99% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

44% id,
65% cov

More...

CALKRO_RS07630 Calkro_1508 WP_013430463.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

32% id,
94% cov

CALKRO_RS07950 Calkro_1573 WP_013430524.1: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

39% id,
51% cov

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

38% id,
40% cov

guaB CALKRO_RS05475 Calkro_1086 WP_013430070.1: IMP dehydrogenase
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

29% id,
57% cov

Q9VRD9: cystathionine beta-synthase (EC 4.2.1.22) from Drosophila melanogaster

33% id,
10% cov

CBS_YEAST / P32582: Cystathionine beta-synthase; Beta-thionase; Serine sulfhydrase; Sulfur transfer protein 4; EC 4.2.1.22 from Saccharomyces cerevisiae
CYS4 / P32582: Cys4 (EC 4.2.1.22) from Saccharomyces cerevisiae
P32582: cystathionine beta-synthase (EC 4.2.1.22) from Saccharomyces cerevisiae

25% id,
12% cov

trpB CALKRO_RS05155 Calkro_1024 WP_013430013.1: tryptophan synthase subunit beta
is similar to:
PaperBLAST

mecA: cystathionine beta-synthase; EC 4.2.1.22 from Emericella nidulans

28% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory