Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor kronotskyensis 2002 (GCF_000166775.1)

Found 34 curated entries in PaperBLAST's database that match '4.2.1.51' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caldicellulosiruptor kronotskyensis 2002, or try another query

pheA CALKRO_RS08950 Calkro_1776 WP_013430713.1: prephenate dehydratase
is similar to:
PaperBLAST

PHEA_METJA / Q58054: Prephenate dehydratase; PDT; MjPDT; EC 4.2.1.51 from Methanocaldococcus jannaschii

42% id,
98% cov

Q8DUV6: prephenate dehydratase (EC 4.2.1.51) from Streptococcus mutans

41% id,
99% cov

Echvi_0123: prephenate and/or arogenate dehydratase (EC 4.2.1.51) from Echinicola vietnamensis

34% id,
96% cov

More...

CALKRO_RS03790 Calkro_0750 WP_013429786.1: ABC transporter substrate-binding protein
is similar to:
PaperBLAST

PHEC_PSEAE / Q01269: Cyclohexadienyl dehydratase; EC 4.2.1.51; EC 4.2.1.91 from Pseudomonas aeruginosa

22% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory