Curated BLAST for Genomes

 

Curated BLAST

Searching in Caldicellulosiruptor kronotskyensis 2002 (GCF_000166775.1)

Found 28 curated entries in PaperBLAST's database that match '4.2.1.8' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Caldicellulosiruptor kronotskyensis 2002, or try another query

uxuA CALKRO_RS09060 Calkro_1797 WP_013430730.1: mannonate dehydratase
is similar to:
PaperBLAST

uxuA / Q9WXS4: D-mannonate dehydratase (EC 4.2.1.8) from Thermotoga maritima

74% id,
99% cov

A4VVI4: mannonate dehydratase (EC 4.2.1.8) from Streptococcus suis

49% id,
96% cov

UXUA_ECOLI / P24215: Mannonate dehydratase; D-mannonate hydro-lyase; EC 4.2.1.8 from Escherichia coli
UxuA / b4322: D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli
uxuA / P24215: D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli
P24215: mannonate dehydratase (EC 4.2.1.8) from Escherichia coli

39% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory